# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.159 2015/08/02 21:43:22 alexxy Exp $
*gromacs-5.0.6 (02 Aug 2015)
02 Aug 2015; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-5.0.6.ebuild:
Version bump. This one seems to be last version for 5.0.x series
*gromacs-5.0.5 (21 Jun 2015)
21 Jun 2015; Christoph Junghans <ottxor@gentoo.org> +gromacs-5.0.5.ebuild:
version bump
08 Mar 2015; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.6.5.ebuild,
-gromacs-4.6.7.ebuild, metadata.xml:
remove old
*gromacs-5.0.4-r1 (06 Mar 2015)
06 Mar 2015; Justin Lecher <jlec@gentoo.org> +gromacs-5.0.4-r1.ebuild,
metadata.xml:
Install missing header
26 Feb 2015; Markus Meier <maekke@gentoo.org> gromacs-5.0.4.ebuild:
arm stable, bug #538370
25 Feb 2015; Agostino Sarubbo <ago@gentoo.org> gromacs-5.0.4.ebuild:
Stable for x86, wrt bug #538370
23 Feb 2015; Agostino Sarubbo <ago@gentoo.org> gromacs-5.0.4.ebuild:
Stable for ppc64, wrt bug #538370
19 Feb 2015; Agostino Sarubbo <ago@gentoo.org> gromacs-5.0.4.ebuild:
Stable for amd64, wrt bug #538370
31 Jan 2015; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.6.6.ebuild,
-gromacs-5.0.1.ebuild, -gromacs-5.0.2-r1.ebuild, -gromacs-5.0.2.ebuild,
-gromacs-5.0.ebuild:
remove old
31 Jan 2015; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.5.ebuild,
gromacs-4.6.6.ebuild, gromacs-4.6.7.ebuild, gromacs-5.0.1.ebuild,
gromacs-5.0.2-r1.ebuild, gromacs-5.0.2.ebuild, gromacs-5.0.4.ebuild,
gromacs-5.0.ebuild, metadata.xml:
Switch to CPU_FLAGS_X86 (bug #538268)
*gromacs-5.0.4 (21 Dec 2014)
21 Dec 2014; Christoph Junghans <ottxor@gentoo.org> +gromacs-5.0.4.ebuild:
version bump
25 Nov 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.5.ebuild,
gromacs-4.6.6.ebuild, gromacs-4.6.7.ebuild, gromacs-5.0.1.ebuild,
gromacs-5.0.2-r1.ebuild, gromacs-5.0.2.ebuild, gromacs-5.0.ebuild:
fixed a typo preventing AVX2 support (bug #530454)
*gromacs-5.0.2-r1 (21 Oct 2014)
21 Oct 2014; Christoph Junghans <ottxor@gentoo.org> +gromacs-5.0.2-r1.ebuild:
fix bash completion (bug #526318)
*gromacs-5.0.2 (02 Oct 2014)
02 Oct 2014; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-5.0.2.ebuild:
Version bump =D
*gromacs-5.0.1 (06 Sep 2014)
06 Sep 2014; Christoph Junghans <ottxor@gentoo.org> +gromacs-5.0.1.ebuild:
version bump
04 Sep 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.ebuild:
added ~x64-macos (tested by me)
*gromacs-4.6.7 (29 Aug 2014)
29 Aug 2014; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.7.ebuild:
version bump
07 Jul 2014; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.6.2.ebuild:
remove old
*gromacs-4.6.6 (07 Jul 2014)
07 Jul 2014; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.6.ebuild:
version bump
*gromacs-5.0 (30 Jun 2014)
30 Jun 2014; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-5.0.ebuild,
metadata.xml:
[sci-chemistry/gromacs] GROMACS 5.0 finaly relesed
26 Mar 2014; Markus Meier <maekke@gentoo.org> gromacs-4.6.5.ebuild:
arm stable, bug #496632
02 Mar 2014; Pacho Ramos <pacho@gentoo.org> gromacs-4.6.5.ebuild:
amd64 stable, bug #496632
24 Feb 2014; Pawel Hajdan jr <phajdan.jr@gentoo.org> gromacs-4.6.5.ebuild:
x86 stable wrt bug #496632
19 Jan 2014; Agostino Sarubbo <ago@gentoo.org> gromacs-4.6.5.ebuild:
Stable for ppc64, wrt bug #496632
31 Dec 2013; Christoph Junghans <ottxor@gentoo.org>
-files/gromacs-4.5.5-cmake-cpp-asm.patch,
-files/gromacs-4.5.5-enable-see.patch,
-files/gromacs-4.5.7-cmake-cpp-asm.patch, -gromacs-4.5.5-r1.ebuild,
-gromacs-4.5.7.ebuild, -gromacs-4.6.3.ebuild, -gromacs-4.6.4.ebuild,
metadata.xml:
clean up
*gromacs-4.6.5 (05 Dec 2013)
05 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.6.5.ebuild:
Version bump =D
*gromacs-4.6.4 (13 Nov 2013)
13 Nov 2013; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.4.ebuild:
version bump
02 Sep 2013; Agostino Sarubbo <ago@gentoo.org> gromacs-4.6.2.ebuild:
Stable for x86, wrt bug #472124
31 Aug 2013; Agostino Sarubbo <ago@gentoo.org> gromacs-4.6.2.ebuild:
Stable for arm, wrt bug #472124
06 Jul 2013; Agostino Sarubbo <ago@gentoo.org> gromacs-4.6.2.ebuild:
Stable for alpha, wrt bug #472124
*gromacs-4.6.3 (05 Jul 2013)
05 Jul 2013; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.3.ebuild:
version bump
04 Jul 2013; Agostino Sarubbo <ago@gentoo.org> gromacs-4.6.2.ebuild:
Stable for ppc64, wrt bug #472124
02 Jul 2013; Agostino Sarubbo <ago@gentoo.org> gromacs-4.6.2.ebuild:
Stable for amd64, wrt bug #472124
*gromacs-4.6.2 (01 Jun 2013)
01 Jun 2013; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.2.ebuild,
-files/gromacs-4.6.1-openmm.patch, -gromacs-4.6.1.ebuild:
version bump
28 May 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.1.ebuild:
fixed a typo, which prevented cuda build
05 May 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.7.ebuild:
clean up fortran
*gromacs-4.5.7 (03 May 2013)
03 May 2013; Christoph Junghans <ottxor@gentoo.org>
+files/gromacs-4.5.7-cmake-cpp-asm.patch, +gromacs-4.5.7.ebuild:
added recent 4.5.x version (bug #468454)
09 Mar 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.1.ebuild:
fix cuda build (bug #460518)
*gromacs-4.6.1 (06 Mar 2013)
06 Mar 2013; Christoph Junghans <ottxor@gentoo.org>
+files/gromacs-4.6.1-openmm.patch, +gromacs-4.6.1.ebuild, -gromacs-4.6.ebuild,
-gromacs-4.6_beta3-r1.ebuild:
version bump
12 Feb 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.ebuild,
gromacs-4.6_beta3-r1.ebuild, metadata.xml:
sse41 -> sse4_1 (bug #456886) + ninja has missing keywords
09 Feb 2013; Pacho Ramos <pacho@gentoo.org> gromacs-4.6.ebuild:
Use readme.gentoo.eclass for elog message (#456068)
25 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.ebuild:
added ~arm tested by me
*gromacs-4.6 (19 Jan 2013)
19 Jan 2013; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.ebuild:
version bump
29 Dec 2012; Christoph Junghans <ottxor@gentoo.org>
gromacs-4.6_beta3-r1.ebuild:
fixed build with mkl-11*
*gromacs-4.6_beta3-r1 (26 Dec 2012)
26 Dec 2012; Christoph Junghans <ottxor@gentoo.org>
+gromacs-4.6_beta3-r1.ebuild, -gromacs-4.6_beta3.ebuild, metadata.xml:
sync with sci overlay
*gromacs-4.6_beta3 (22 Dec 2012)
22 Dec 2012; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6_beta3.ebuild,
-gromacs-4.6_beta2.ebuild, metadata.xml:
version bump
08 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.5-r1.ebuild,
gromacs-4.6_beta2.ebuild:
CMAKE_BUILD_DIR -> BUILD_DIR
*gromacs-4.6_beta2 (07 Dec 2012)
07 Dec 2012; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6_beta2.ebuild,
-gromacs-4.6_beta1.ebuild:
version bump
*gromacs-4.6_beta1 (30 Nov 2012)
30 Nov 2012; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6_beta1.ebuild,
metadata.xml:
version bump
19 Oct 2012; Justin Lecher <jlec@gentoo.org> gromacs-4.5.5-r1.ebuild:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
14 Oct 2012; Justin Lecher <jlec@gentoo.org> gromacs-4.5.5-r1.ebuild:
Prepare for fortran2.eclass update
04 May 2012; Jeff Horelick <jdhore@gentoo.org> gromacs-4.5.5-r1.ebuild:
dev-util/pkgconfig -> virtual/pkgconfig
09 Mar 2012; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.4-r1.ebuild,
metadata.xml:
remove old (fixes bug #392121)
08 Mar 2012; Brent Baude <ranger@gentoo.org> gromacs-4.5.5-r1.ebuild:
Marking gromacs-4.5.5-r1 ppc64 for bug 391147
06 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.5-r1.ebuild:
fix bug #402339
05 Feb 2012; Raúl Porcel <armin76@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.5-r1.ebuild:
Drop alpha/sparc keywords
06 Jan 2012; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.4-r2.ebuild,
-gromacs-4.5.5.ebuild:
remove obsolete
06 Jan 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.5-r1.ebuild:
keyword ~x86-macos
26 Dec 2011; Markus Meier <maekke@gentoo.org> gromacs-4.5.5-r1.ebuild:
x86 stable, bug #391147
20 Dec 2011; Agostino Sarubbo <ago@gentoo.org> gromacs-4.5.5-r1.ebuild:
Stable for AMD64, wrt bug #391147
*gromacs-4.5.5-r1 (19 Dec 2011)
19 Dec 2011; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.5.5-r1.ebuild,
+files/gromacs-4.5.5-cmake-cpp-asm.patch,
+files/gromacs-4.5.5-enable-see.patch:
bring back sse2 kernels
14 Dec 2011; Agostino Sarubbo <ago@gentoo.org> gromacs-4.5.5.ebuild:
Stable for AMD64, wrt bug #391147
11 Dec 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> gromacs-4.5.5.ebuild:
x86 stable wrt bug #391147
28 Sep 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.5.ebuild:
cmake variable LIB was renamed to GMXLIB
*gromacs-4.5.5 (27 Sep 2011)
27 Sep 2011; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.5.5.ebuild:
Version bump
10 Sep 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.4-r2.ebuild:
Migrate to the bash-completion-r1 eclass
18 Jul 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4-r2.ebuild:
fix for external blas/lapack (bug #373559)
17 Jul 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4-r2.ebuild:
corrected libdir (bug #375473)
26 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.4-r2.ebuild, metadata.xml:
migrate from 'git' to 'git-2'
23 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.4-r2.ebuild:
only USE=fkernels needs fortran
21 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.4-r2.ebuild:
Add dependency on virtual/fortran
21 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.4-r2.ebuild:
Added fortran-2.eclass support
21 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.4-r1.ebuild:
Use append-libs
*gromacs-4.5.4-r2 (08 Jun 2011)
08 Jun 2011; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.5.4-r2.ebuild:
build with cmake to decrease build time
01 May 2011; Kacper Kowalik <xarthisius@gentoo.org> -gromacs-4.5.3-r4.ebuild,
-gromacs-4.5.4.ebuild, gromacs-4.5.4-r1.ebuild:
ppc64 stable wrt #357017. Drop old.
11 Apr 2011; Christoph Mende <angelos@gentoo.org> gromacs-4.5.4-r1.ebuild:
Stable on amd64 wrt bug #357017
10 Apr 2011; Raúl Porcel <armin76@gentoo.org> gromacs-4.5.4-r1.ebuild:
alpha/sparc stable wrt #357017
10 Apr 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.0.7-r4.ebuild,
-files/gromacs-4.0.9999-docdir.patch:
remove 4.0.* (EOM)
10 Apr 2011; Thomas Kahle <tomka@gentoo.org> gromacs-4.5.4-r1.ebuild:
x86 stable per bug 357017
*gromacs-4.5.4-r1 (04 Apr 2011)
04 Apr 2011; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.5.4-r1.ebuild:
Fix QA execstack bug #361687
04 Apr 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.0.7-r5.ebuild,
-gromacs-4.5.3.ebuild, -gromacs-4.5.3-r3.ebuild:
Removed old
04 Apr 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4.ebuild:
Removed sse use flag (fixed bug #361933)
02 Apr 2011; Raúl Porcel <armin76@gentoo.org> gromacs-4.5.3-r4.ebuild:
alpha/sparc stable wrt #357017
02 Apr 2011; Kacper Kowalik <xarthisius@gentoo.org> gromacs-4.5.4.ebuild:
Bump to EAPI=4 for REQUIRED_USE on fkernels and threads wrt #361687. Mark
ppc64 stable wrt #357017
02 Apr 2011; Samuli Suominen <ssuominen@gentoo.org> gromacs-4.5.4.ebuild:
Remove illegal QA_EXECSTACK for source based package.
02 Apr 2011; Kacper Kowalik <xarthisius@gentoo.org> gromacs-4.5.4.ebuild:
Revert to ~ppc64
25 Mar 2011; Kacper Kowalik <xarthisius@gentoo.org> gromacs-4.5.4.ebuild:
ppc64 stable wrt #357017
22 Mar 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4.ebuild:
New manual, added back pkg-config to DEPEND
*gromacs-4.5.4 (21 Mar 2011)
21 Mar 2011; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.5.4.ebuild:
Version bump
17 Mar 2011; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.5.3-r4.ebuild:
Clean up ebuild a bit
09 Mar 2011; Thomas Kahle <tomka@gentoo.org> gromacs-4.5.3-r4.ebuild:
x86 stable per bug 357017
08 Mar 2011; Markos Chandras <hwoarang@gentoo.org> gromacs-4.5.3-r4.ebuild:
Stable on amd64 wrt bug #357017
*gromacs-4.5.3-r4 (05 Mar 2011)
05 Mar 2011; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.5.3-r4.ebuild:
Rework using of external blas & lapack. Also fix issues with prefix and mpi
build
02 Mar 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.0.7-r4.ebuild,
gromacs-4.0.7-r5.ebuild, gromacs-4.5.3.ebuild, gromacs-4.5.3-r3.ebuild:
Correct Slots for gtk 3 introduction to tree
*gromacs-4.5.3-r3 (19 Feb 2011)
19 Feb 2011; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.5.3-r3.ebuild:
Version bump (fixes bug #339837)
04 Jan 2011; Jeremy Olexa <darkside@gentoo.org> metadata.xml:
QA: Remove redundant local use flag description
16 Dec 2010; Justin Lecher <jlec@gentoo.org> gromacs-4.0.7-r4.ebuild,
gromacs-4.0.7-r5.ebuild, gromacs-4.5.3.ebuild:
Removal of fortran.eclass, #348851
*gromacs-4.5.3 (25 Nov 2010)
*gromacs-4.0.7-r5 (25 Nov 2010)
25 Nov 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.4.ebuild,
-files/gromacs-4.0.4-configure-gfortran.patch,
-files/gromacs-4.0.4-sparc-cyclecounter.patch, -gromacs-4.0.5.ebuild,
gromacs-4.0.7-r4.ebuild, +gromacs-4.0.7-r5.ebuild,
-files/gromacs-4.0.9999-ccache.patch,
-files/gromacs-4.0.9999-configure-gfortran.patch, -gromacs-4.5.1.ebuild,
+gromacs-4.5.3.ebuild:
Version bump. Clean up old versions. Thanks to Christoph Junghans
25 Oct 2010; Samuli Suominen <ssuominen@gentoo.org>
gromacs-4.0.7-r4.ebuild:
ppc64 stable wrt #326151
12 Oct 2010; Raúl Porcel <armin76@gentoo.org> gromacs-4.0.7-r4.ebuild:
sparc stable wrt #326151
*gromacs-4.5.1 (14 Sep 2010)
14 Sep 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.7-r3.ebuild,
+gromacs-4.5.1.ebuild:
Version bump. Now it can use ffambber. And threads. Many thanks to
Christoph Junghans
11 Sep 2010; Tobias Klausmann <klausman@gentoo.org>
gromacs-4.0.7-r4.ebuild:
Stable on alpha, bug #326151
17 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org>
gromacs-4.0.7-r3.ebuild, gromacs-4.0.7-r4.ebuild,
-files/gromacs-4.0.7_upstream2010-06-08.patch.gz:
Move gromacs-4.0.7_upstream2010-06-08.patch.gz to gentoo mirrors. Fixes
bug 328659. Thanks to Samuli for the report
10 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
gromacs-4.0.7-r4.ebuild:
stable x86, bug 326151
09 Jul 2010; Pacho Ramos <pacho@gentoo.org> gromacs-4.0.7-r4.ebuild:
amd64 stable, bug 326151
08 Jul 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.7-r4.ebuild:
Fix typo in ebuild for prefix setup
*gromacs-4.0.7-r4 (04 Jul 2010)
04 Jul 2010; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7-r4.ebuild:
Fix bug #326331. thanks to Christoph Junghans
05 Jul 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-3.3.1-r1.ebuild,
-gromacs-3.3.3.ebuild:
Gromacs 3.x moved to sci overlay since its unmaintained and no longer
supported
*gromacs-4.0.7-r3 (27 Jun 2010)
27 Jun 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.7.ebuild,
-gromacs-4.0.7-r1.ebuild, +gromacs-4.0.7-r3.ebuild,
-files/gromacs-4.0.7-docdir.patch,
+files/gromacs-4.0.7_upstream2010-06-08.patch:
Added patches from upstream stable branch. Added ffamber ports. Also fixed
bugs #301854 and #284431. Big thank to Christoph Junghans
24 Jun 2010; Justin Lecher <jlec@gentoo.org> gromacs-3.3.1-r1.ebuild,
gromacs-3.3.3.ebuild:
Blocking sci-mathematics/num-utils, #257566
*gromacs-4.0.7-r1 (24 Jan 2010)
24 Jan 2010; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7-r1.ebuild,
+files/gromacs-4.0.9999-ccache.patch,
+files/gromacs-4.0.9999-configure-gfortran.patch,
+files/gromacs-4.0.9999-docdir.patch:
Fix bug #302048. thanks to Christoph Junghans
18 Jan 2010; Raúl Porcel <armin76@gentoo.org> gromacs-4.0.5.ebuild:
alpha stable
08 Dec 2009; Alexey Shvetsov <alexxy@gentoo.org>
+files/gromacs-4.0.7-docdir.patch:
Add missing patch. thanks to rei4dan
*gromacs-4.0.7 (07 Dec 2009)
07 Dec 2009; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7.ebuild:
Version bump
31 Oct 2009; Raúl Porcel <armin76@gentoo.org> gromacs-4.0.5.ebuild:
sparc stable wrt #260995
30 Oct 2009; Markus Meier <maekke@gentoo.org> gromacs-4.0.5.ebuild:
amd64/x86 stable, bug #260995
26 Sep 2009; Brent Baude <ranger@gentoo.org> gromacs-4.0.4.ebuild:
Marking gromacs-4.0.4 ppc64 for bug 260995
28 Aug 2009; William Hubbs <williamh@gentoo.org> metadata.xml:
new global use flag "zsh-completion"
15 May 2009; Markus Meier <maekke@gentoo.org> gromacs-4.0.4.ebuild:
amd64 stable, bug #260995
14 May 2009; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.3.ebuild,
+gromacs-4.0.5.ebuild:
Drop old version; Fix keywords for 4.0.5. Sorry =)
*gromacs-4.0.5 (14 May 2009)
14 May 2009; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.5.ebuild:
Bump new version with bugfixes. Bug #269754
14 May 2009; Christian Faulhammer <fauli@gentoo.org> gromacs-4.0.4.ebuild:
stable x86, bug 260995
13 May 2009; Tobias Klausmann <klausman@gentoo.org> gromacs-4.0.4.ebuild:
Stable on alpha, bug #260995
10 May 2009; Ferris McCormick <fmccor@gentoo.org> gromacs-4.0.4.ebuild:
Sparc stable, Bug #260995, which see for discussion.
10 May 2009; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.4.ebuild,
+files/gromacs-4.0.4-sparc-cyclecounter.patch:
Add upstream fix for sparc bug #260995
*gromacs-4.0.4 (20 Apr 2009)
20 Apr 2009; Alexey Shvetsov <alexxy@gentoo.org>
+files/gromacs-4.0.4-configure-gfortran.patch, metadata.xml,
-gromacs-4.0.ebuild, -gromacs-4.0.2.ebuild, +gromacs-4.0.4.ebuild:
Add new gromacs 4.0.4
08 Mar 2009; Markus Meier <maekke@gentoo.org> gromacs-4.0.3.ebuild:
amd64/x86 stable, bug #260995
22 Jan 2009; Jeff Gardner <je_fro@gentoo.org> +gromacs-4.0.3.ebuild:
Latest version.
*gromacs-4.0.2 (04 Jan 2009)
04 Jan 2009; Jeff Gardner <je_fro@gentoo.org> +gromacs-4.0.2.ebuild:
Latest version, thanks to Alexxy for the prod :)
*gromacs-4.0 (12 Oct 2008)
12 Oct 2008; Jeff Gardner <je_fro@gentoo.org> +gromacs-4.0.ebuild:
Latest version, closing bug #241474 thanks to Alexey Shvetsov
06 Oct 2008; Jeff Gardner <je_fro@gentoo.org> ChangeLog, Manifest:
Fixing changelog to reflect addition of gromacs-3.3.3.ebuild
*gromacs-3.3.3 (06 Oct 2008)
06 Oct 2008; Jeff Gardner <je_fro@gentoo.org> +gromacs-3.3.3.ebuild:
Latest stable version, thanks to Alexey Shvetsov, closing bug #193532
06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.
27 Jun 2008; Ulrich Mueller <ulm@gentoo.org> gromacs-3.3.1-r1.ebuild:
Change dependency from virtual/motif to x11-libs/openmotif, bug 224749.
23 Jun 2008; Jeff Gardner <je_fro@gentoo.org>
-files/gromacs-alpha-axp_asm.patch, -files/gromacs-ppc64-altivec.patch,
-gromacs-3.2.1-r1.ebuild, gromacs-3.3.1-r1.ebuild:
Moving disco manpage to g_disco, fixing bug 210083.
03 Jun 2008; Jeff Gardner <je_fro@gentoo.org> gromacs-3.3.1-r1.ebuild:
No altivec patching with this gromacs version. Thanks to Maik Nijhuis in
bug #224773.
13 Jun 2007; Raúl Porcel <armin76@gentoo.org> gromacs-3.3.1-r1.ebuild:
Modify the ebuild so it compiles on alpha and mark stable wrt #168182
17 Mar 2007; Steve Dibb <beandog@gentoo.org> gromacs-3.3.1-r1.ebuild:
amd64 stable, bug 168182
11 Mar 2007; Sven Wegener <swegener@gentoo.org> gromacs-3.3.1-r1.ebuild:
Properly indent src_compile, thanks to ferringb.
08 Mar 2007; Jason Wever <weeve@gentoo.org> gromacs-3.3.1-r1.ebuild:
Stable on SPARC wrt bug #168182.
07 Mar 2007; Jeff Gardner <je_fro@gentoo.org> gromacs-3.3.1-r1.ebuild:
Fix up the demo script so the xterms stay open.
24 Feb 2007; Raúl Porcel <armin76@gentoo.org> gromacs-3.3.1-r1.ebuild:
x86 stable wrt bug 168182
23 Feb 2007; Markus Rothe <corsair@gentoo.org> gromacs-3.3.1-r1.ebuild:
Stable on ppc64; bug #168182
07 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -gromacs-3.2.1.ebuild,
-gromacs-3.3.ebuild, -gromacs-3.3.1.ebuild:
QA: Removed unused versions.
20 Dec 2006; Jeff Gardner <je_fro@gentoo.org> gromacs-3.3.1-r1.ebuild:
Small fix of DEPEND
20 Dec 2006; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
Many thanks to Rene Meier, Shvetsov Alexey Mathias Weigt, dawe, and Mike
Hlavac for their contributions to gromacs-3.3.1-r1.
*gromacs-3.3.1-r1 (17 Dec 2006)
17 Dec 2006; Jeff Gardner <je_fro@gentoo.org> +gromacs-3.3.1-r1.ebuild:
Fixup to address bugs 135146 118421 and 147614.
20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
(#148281) Change herd to sci-chemistry from sci.
*gromacs-3.3.1 (08 Aug 2006)
08 Aug 2006; Markus Dittrich <markusle@gentoo.org> +gromacs-3.3.1.ebuild:
Version bump. Ebuild now inherits the fortran.eclass and forces
the use of g77 since gfortran is presently missing some of the
fortran intrinsics needed by gromacs. See bug #141672.
05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
Remove myself as maintainer, anyone feel free to work on this, although I'll
continue to do so as well.
07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
Update to my new email address.
25 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.2.1.ebuild,
gromacs-3.2.1-r1.ebuild, gromacs-3.3.ebuild:
(#116346) Change xml2 USE flag to xml.
07 May 2006; Markus Rothe <corsair@gentoo.org> gromacs-3.2.1-r1.ebuild:
Stable on ppc64; bug #89969
*gromacs-3.3 (14 Oct 2005)
14 Oct 2005; Donnie Berkholz <dberkholz@gentoo.org>; +gromacs-3.3.ebuild:
(#109184) Bump. Main change in ebuild is adding a check for fftw built w/
mpi if trying to build w/ mpi. One of the more interesting upstream changes
is the addition of x86-64 and ia64 assembly.
05 Aug 2005; <omkhar@gentoo.org> +files/gromacs-ppc64-altivec.patch,
gromacs-3.2.1-r1.ebuild:
Added patch back as binary due to metatags. Made sure patch only applies when ppc64 && altivec
*gromacs-3.2.1-r1 (04 Aug 2005)
04 Aug 2005; <omkhar@gentoo.org> +files/gromacs-ppc64-altivec.patch,
+gromacs-3.2.1-r1.ebuild:
Added ppc64 support and altivec support
24 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+gromacs-3.2.1.ebuild:
Moved from app-sci/gromacs to sci-chemistry/gromacs.
06 Jun 2004; Danny van Dyk <kugelfang@gentoo.org> gromacs-3.2.1.ebuild:
Marked stable on amd64.
22 Apr 2004; Donnie Berkholz <dberkholz@gentoo.org>;
-files/gromacs-3.2-all-static-fix.patch, -gromacs-3.1.4-r1.ebuild,
-gromacs-3.1.4-r2.ebuild, gromacs-3.2.1.ebuild, -gromacs-3.2.ebuild:
Mark 3.2.1 stable on x86. Remove old versions.
22 Apr 2004; Donnie Berkholz <dberkholz@gentoo.org>;
gromacs-3.1.4-r1.ebuild, gromacs-3.2.1.ebuild:
Add app-shells/tcsh to dependencies (#48691).
22 Apr 2004; Danny van Dyk <kugelfang@gentoo.org> gromacs-3.2.1.ebuild:
marked ~amd64
*gromacs-3.2.1 (02 Apr 2004)
02 Apr 2004; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.2.1.ebuild:
Version bump, closes #44377.
*gromacs-3.2 (29 Feb 2004)
29 Feb 2004; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.2.ebuild,
files/gromacs-3.2-all-static-fix.patch:
Version bump. New xml2 USE flag.
*gromacs-3.1.4-r2 (28 Feb 2004)
28 Feb 2004; Donnie Berkholz <dberkholz@gentoo.org>;
gromacs-3.1.4-r2.ebuild:
Closing bug #42989 by installing binaries to /usr/bin. Also discovered libs
needed to be installed to /usr/lib. Enabled assembly for Alphas too, if any
Alpha user ever tries this.
04 Oct 2003; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.1.3.ebuild,
gromacs-3.1.4.ebuild:
Pulling old versions.
04 Oct 2003; Donnie Berkholz <dberkholz@gentoo.org>;
gromacs-3.1.4-r1.ebuild:
Fixing fftw dep. Won't compile against fftw-3 yet, in part because it looks
for fftw3.h instead of fftw.h, and in part because MPI doesn't work in fftw-3
yet.
*gromacs-3.1.4-r1 (23 Mar 2003)
23 Mar 2003; George Shapovalov <george@gentoo.org> gromacs-3.1.4-r1.ebuild :
added mpi support, lam-mpi is the only working implementation at the moment.
!IMPORTANT!:
Since portage cannot at present check whether optional dependencies of dependencies were turned on,
please check yourself that gromacs and fftw have identical mpi setting.
Generally USE="mpi" emerge gromacs should work fine if you did not install fftw previously (with
different mpi off for example).
*gromacs-3.1.4 (08 Nov 2002)
08 Nov 2002; George Shapovalov <george@gentoo.org> gromacs-3.1.4.ebuild, files/digest-gromacs-3.1.4 :
new version.
!!!IMPORTANT!!!
I changed --prefix to point to /usr for FHS compliance.
Now the binaries and the libs are getting installed into
/usr/i686-pc-linux-gnu/{bin,lib} correspondingly and the data into /usr/share/gromacs-${PV}
This seems to fit well in the existing direcory structure and does not conflict with gcc.
*gromacs-3.1.3 (27 Apr 2002)
27 Apr 2002; George Shapovalov <george@gentoo.org> all_files :
initial release.