Genome wide annotation for Arabidopsis


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Documentation for package ‘org.At.tair.db’ version 2.6.4

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org.At.tair Bioconductor annotation data package
org.At.tair.db Bioconductor annotation data package
org.At.tairARACYC Mappings between TAIR identifiers and KEGG pathway identifiers
org.At.tairARACYCENZYME Map between TAIR IDs and Enzyme Names from ARACYC
org.At.tairCHR Map TAIR IDs to Chromosomes
org.At.tairCHRLENGTHS A named vector for the length of each of the chromosomes
org.At.tairCHRLOC Map Manufacturer IDs to Chromosomal Location
org.At.tairCHRLOCEND Map Manufacturer IDs to Chromosomal Location
org.At.tairENTREZID Map TAIR identifiers with Entrez Gene identifiers
org.At.tairENZYME Map between TAIR IDs and Enzyme Commission (EC) Numbers
org.At.tairENZYME2TAIR Map between Enzyme Commission Numbers and TAIR Identifiers
org.At.tairGENENAME Map between TAIR IDs and Genes
org.At.tairGO Map between TAIR IDs and Gene Ontology (GO)
org.At.tairGO2ALLTAIRS Map between Gene Ontology (GO) Identifiers and all TAIR Identifiers in the subtree
org.At.tairGO2TAIR Map between TAIR IDs and Gene Ontology (GO)
org.At.tairMAPCOUNTS Number of mapped keys for the maps in package org.At.tair.db
org.At.tairORGANISM The Organism for org.At.tair
org.At.tairPATH Mappings between TAIR identifiers and KEGG pathway identifiers
org.At.tairPATH2TAIR Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and TAIR Identifiers
org.At.tairPMID Map between TAIR Identifiers and PubMed Identifiers
org.At.tairPMID2TAIR Map between PubMed Identifiers and TAIR Identifiers
org.At.tairREFSEQ Map between TAIR Identifiers and RefSeq Identifiers
org.At.tairREFSEQ2TAIR Map between TAIR Identifiers and RefSeq Identifiers
org.At.tairSYMBOL Map between TAIR Identifiers and Gene Symbols
org.At.tair_dbconn Collect information about the package annotation DB
org.At.tair_dbfile Collect information about the package annotation DB
org.At.tair_dbInfo Collect information about the package annotation DB
org.At.tair_dbschema Collect information about the package annotation DB