raretaxa {labdsv}R Documentation

Identify Rare Taxa in a Data Set

Description

Identifes the distribution of rare taxa in a taxon dataframe, using a specified rareness threshold.

Usage

raretaxa(taxa,min=1,log=FALSE,type='b')

Arguments

taxa

a taxon dataframe with samples as rows and species as columns

min

the minimum number of occurrences for a species to be considered rare

log

controls whether or not the Y axis on some graphs should be log scaled

type

the plot type. ‘b’ = both points and lines

Details

Rare species are an issue in ecological data sets. This function produces three graphs identifying (1) the distribution of rare species/plot, (2) the mean abundance (when present) of rare species, and (3) the total abundance or rare species/plot.

Value

Produces only graphs and returns no output

Author(s)

David W. Roberts droberts@montana.edu

Examples

data(bryceveg)
## Not run: raretaxa(bryceveg,min=3,log=TRUE)

[Package labdsv version 1.4-1 Index]