Pedigree functions


[Up] [Top]

Documentation for package ‘kinship2’ version 1.3.3

Help Pages

align.pedigree Generate plotting information for a pedigree
as.data.frame.pedigree Create pedigree structure
autohint Align a pedigree to print well
bitSize Calculate pedigree bitsize, defined as 2 * # NonFounders - # Founders
excludeStrayMarryin Find unavailable subjects in a pedigree
excludeUnavailFounders Find unavailable subjects in a pedigree
familycheck Error check for a family classification
findAvailAffected Find a single person to trim from a pedigree whose is available
findAvailNonInform Find subjects from a pedigree who are available and uninformative
findUnavailable Find unavailable subjects in a pedigree
kindepth Compute the depth of each subject in a pedigree
kinship Compute a kinship matrix
kinship.default Compute a kinship matrix
makefamid Construct a family id from pedigree information
makekinship Create a sparse kinship matrix
minnbreast Minnesota Breast Cancer Study
minnbreast2 Minnesota Breast Cancer Study
pedigree Create pedigree structure
pedigree.legend Plot a pedigree legend
pedigree.shrink Trim a pedigree to specified bit size with priority placed on trimming uninformative subjects.
pedigree.trim Find unavailable subjects in a pedigree
pedigree.unrelated Determine set of maximum number of unrelated available subjects from a pedigree
plot.pedigree plot pedigrees
plot.pedigree.shrink plot pedigree.shrink object that is a shrunk pedigree object
print.pedigree Create pedigree structure
print.pedigree.shrink Trim a pedigree to specified bit size with priority placed on trimming uninformative subjects.
printBanner Print a nice banner
sample.ped Two example pedigrees
testped1 testped1