BiCluster Algorithms

Documentation for package ‘biclust’ version 1.0.1

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additiveVariance	Coherence measures
BCBimax	The Bimax Bicluster algorithm
BCBimax-class	The Bimax Bicluster algorithm
BCCC	The CC Bicluster algorithm
BCCC-class	The CC Bicluster algorithm
BCPlaid	The Plaid Model Bicluster algorithm
BCPlaid-class	The Plaid Model Bicluster algorithm
BCQuest	The Questmotif Bicluster algorithm
BCQuest-class	The Questmotif Bicluster algorithm
BCQuestmet	The Questmotif Bicluster algorithm
BCQuestmet-class	The Questmotif Bicluster algorithm
BCQuestord	The Questmotif Bicluster algorithm
BCQuestord-class	The Questmotif Bicluster algorithm
BCrepBimax	The Bimax Bicluster algorithm
BCrepBimax-class	The Bimax Bicluster algorithm
BCSpectral	The Spectral Bicluster algorithm
BCSpectral-class	The Spectral Bicluster algorithm
BCXmotifs	The Xmotifs Bicluster algorithm
BCXmotifs-class	The Xmotifs Bicluster algorithm
BicatYeast	BicAT Yeast
Biclust	The Biclust Class
biclust	The biclust Method
Biclust-class	The Biclust Class
biclust-method	The Bimax Bicluster algorithm
biclust-method	The CC Bicluster algorithm
biclust-method	The Plaid Model Bicluster algorithm
biclust-method	The Questmotif Bicluster algorithm
biclust-method	The Spectral Bicluster algorithm
biclust-method	The Xmotifs Bicluster algorithm
biclust-method	The biclust Method
biclustbarchart	Bicluster Barchart
bicluster	Extract Bilcuster
biclusternumber	Extract Bilcuster
biclustmember	Bicluster Membership Graph
BiclustMethod	The BiclustMethod Virtual Class
BiclustMethod-class	The BiclustMethod Virtual Class
BiclustResult	The Biclust Class
bicorder	Bicluster Membership Graph
Bimax	The Bimax Bicluster algorithm
bimax.grid	Parameter Grid for BCBimax Biclustering
binarize	Binarize
binarizeByPercentage	Binarize
bubble plot	Bubbleplot
bubbleplot	Bubbleplot
CC	The CC Bicluster algorithm
ChiaKaruturi	Chia and Karuturi Function
clustmember	Bicluster Membership Graph
coherence	Coherence measures
computeObservedFstat	Diagnostic F Statistic Calculation
constantVariance	Coherence measures
densityOnes	Binarize
diagnoseColRow	Bootstrap Procedure for Bicluster Diagnostics
diagnosticPlot	Diagnostic F Statistics Visualization
discretize	Create a discret matrix
drawHeatmap	Draw Heatmap
drawHeatmap2	Draw Heatmap
E. coli microarray synthetic data matrix	SynTReN E. coli
EisenYeast	Eisen Yeast
ensemble	Ensemble Methods for Bicluster Algorithms
Escherichia Coly data matrix generated by SynTReN	SynTReN E. coli
heatmap	Draw Heatmap
heatmapBC	Overlapping Heatmap
isoverlapp	Is Bicresult overlapping?
jaccard2	Jaccardind
jaccardind	Jaccardind
Kluger biclustering	The Spectral Bicluster algorithm
multiplicativeVariance	Coherence measures
parallel coordinates	Parallel Coordinates
parallelCoordinates	Parallel Coordinates
plaid	The Plaid Model Bicluster algorithm
plaid model	The Plaid Model Bicluster algorithm
plaid.grid	Parameter Grid for BCPlaid Biclustering
plotclust	Barplot of Bicluster
predictBimax	Predict from a BCrepBimax Result
Quest	The Questmotif Bicluster algorithm
repBimax	The Bimax Bicluster algorithm
Saccharomices Cerevisiae data matrix	Eisen Yeast
Saccharomices Cerevisiae reduced data matrix	BicAT Yeast
show-method	The Biclust Class
signVariance	Coherence measures
spectral	The Spectral Bicluster algorithm
spectral biclustering	The Spectral Bicluster algorithm
star graph	Bubbleplot
summary-method	The Biclust Class
SyntrenEcoli	SynTReN E. coli
turner biclustering	The Plaid Model Bicluster algorithm
writeBiclusterResults	writeBiclusterResults
writeBiclusters	writeBiclusterResults
writeclust	Write a Bicluster as a Cluster Result
Xmotif	The Xmotifs Bicluster algorithm
yeast microarray data matrix	Eisen Yeast
yeast microarray reduced data matrix	BicAT Yeast