ape-defunct {ape} | R Documentation |
These functions have been removed from ape or moved to another package.
klastorin(phy) mlphylo(...) DNAmodel(...) sh.test(...) heterozygosity(x, variance = FALSE) H(x, variance = FALSE) nuc.div(x, variance = FALSE, pairwise.deletion = FALSE) theta.h(x, standard.error = FALSE) theta.k(x, n = NULL, k = NULL) theta.s(s, n, variance = FALSE) evolve.phylo(phy, value, var) plot.ancestral(...) chronogram(...) ratogram(...) NPRS.criterion(...)
klastorin
has been removed because it does not seem to be used
and this helped to clear some internal C code (this function may be
put back with a different coding).
mlphylo
, DNAmodel
and sh.test
have been removed:
see the package phangorn for a much better implementation of
these methods (and others).
heterozygosity
, nuc.div
, theta.h
, theta.k
and theta.s
have been moved to pegas.
evolve.phylo
and plot.ancestral
have been deprecated by
the new function rTraitCont
.
chronogram
, ratogram
, and NPRS.criterion
have
ceased to be maintained: consider using chronopl
.