makeGenericArray {GenomeGraphs}R Documentation

Creates an object of class GenericArray

Description

Creates an object of class Generic Array representing microarray data. This could be gene expression, array CGH, etc.

Usage

makeGenericArray(intensity, probeStart, probeEnd, trackOverlay, dp = NULL)

Arguments

intensity

Matrix of intensities, probes in the rows, samples in the columns

probeStart

Vector of start positions for the probes

probeEnd

Vector of end positions for probes (optional)

trackOverlay

Object of class TrackOverlay, needs to be added if overlays should be plotted as well

dp

Object of class DisplayPars which handles the display parameters for plotting

Value

Object of class GenericArray

Author(s)

Jim Bullard and Steffen Durinck

References

BMC bioinformatics 2009

See Also

gdPlot

Examples

showClass("GenericArray")

[Package GenomeGraphs version 1.14.0 Index]