GenomeAxis-class {GenomeGraphs} | R Documentation |
Represents a genomic coordinate axis
Objects can be created by calls of the form new("GenomeAxis", ...)
.
add53
:Object of class "logical"
, indicating if 5 to 3 prime direction needs to be plotted
add35
:Object of class "logical"
, indicating if
3 to 5 prime direction needs to be plotted
dp
:Object of class "DisplayPars"
, containing the display parameters such as size of the plot and color
littleTicks
:Object of class "logical"
,
indicating if the genome axis should be dense for improved
locating of regions of interest.
No methods defined with class "GenomeAxis" in the signature.
Steffen Durinck
http://www.stat.berkeley.edu/~steffen/
objects to See Also as gdPlot
if(interactive()){ mart = useMart("ensembl", dataset="hsapiens_gene_ensembl") genomeAxis = new("GenomeAxis", add53=TRUE) plusStrand = new("GeneRegion", chromosome = "17", start = 30450000, end = 30550000, strand = "+", biomart = mart) gdPlot(list(genomeAxis, plusStrand), minBase = 30450000, maxBase = 30550000) }