orcPeaks {EatonEtAlChIPseq}R Documentation

Peaks from ChIP-seq alignments to yeast chromosome XIV

Description

Peaks on yeast chromosome XIV of ChIP-seq data of ORC-binding sites in yeast from Eaton et al. 2010

Usage

data(orcPeaksRep1)
data(orcPeaksRep2)

Details

This is the subset of Saccharomyces cerevisiae chromosome XIV peaks from two ChIP-seq replicates of a origin recognition complex (ORC) binding experiment.

Source

ChIP-seq peaks extracted from ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM424nnn/GSM424494/GSM424494_wt_G2_orc_chip_rep1.bed.gz and ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM424nnn/GSM424494/GSM424494_wt_G2_orc_chip_rep2.bed.gz

References

Conserved nucleosome positioning defines replication origins. Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. Genes Dev. 2010 Apr 15;24(8):748-53.

Examples

data(orcPeaksRep1)
data(orcPeaksRep2)

[Package EatonEtAlChIPseq version 0.0.5 Index]