countTableForGene {DEXSeq} | R Documentation |
This function returns a matrix of non negative integers containing a count table for a specified geneID from an ExonCountSet object. The count table contains one row for every counting bin of the gene and a column for every sample.
countTableForGene(ecs, geneID, normalized=FALSE, withDispersion=FALSE)
ecs |
An ExonCountSet. |
geneID |
A geneID to get the count table. |
normalized |
If TRUE, the raw counts will be normalized by the size factors. |
withDispersion |
If TRUE, an extra column with the dispersion estimate used in the test will added to the count table. |
data("pasillaExons", package="pasilla") pasillaExons <- estimateSizeFactors( pasillaExons ) countTableForGene(pasillaExons, "FBgn0085442", normalized=FALSE)