counts {DEXSeq} | R Documentation |
The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (a counting bin, i.e., an exon or part of an exon), and one column for each sample.
## S4 method for signature 'ExonCountSet' counts(object, normalized=FALSE) ## S4 replacement method for signature 'ExonCountSet,matrix' counts(object) <- value
object |
An ExonCountSet object. |
normalized |
If TRUE, the counts will be normalized by the size factors. |
value |
An integer matrix of counts, each row corresponding to an exon and each column corresponding to a sample. |
data("pasillaExons", package="pasilla") head( counts( pasillaExons ) )