fitInfo {DESeq}R Documentation

Accessor function for the fitInfo objects in a CountDataSet

Description

After calling estimateDispersions, a CountDataSet object is populated with one or (in case of a “per-condition” estimation) several fitInfo objects, which can be accessed with this function.

Usage

fitInfo( cds, name=NULL )

Arguments

cds

a CountDataSet

name

if estimateDispersion was called with method="per-condition" a name hasd to specified. Try ls(cds@fitInfo.

Author(s)

Simon Anders, sanders@fs.tum.de

See Also

estimateDispersions

Examples

   cds <- makeExampleCountDataSet()
   cds <- estimateSizeFactors( cds )
   cds <- estimateDispersions( cds )
   str( fitInfo( cds ) )

[Package DESeq version 1.6.1 Index]