counts {DESeq} | R Documentation |
The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.
## S4 method for signature 'CountDataSet' counts(object, normalized=FALSE) ## S4 replacement method for signature 'CountDataSet,matrix' counts(object) <- value
object |
a |
normalized |
logical indicating whether or not to divide the counts by the size factors before returning. |
value |
integer matrix. |
Simon Anders, sanders@fs.tum.de
cds <- makeExampleCountDataSet() head( counts( cds ) )