Package Bio :: Package Align :: Module AlignInfo
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Module Bio.Align.AlignInfo

Extract information from alignment objects.

In order to try and avoid huge alignment objects with tons of functions, functions which return summary type information about alignments should be put into classes in this module.

classes: o SummaryInfo o PSSM
Classes
PSSM Represent a position specific score matrix.
SummaryInfo Calculate summary info about the alignment.

Function Summary
  print_info_content(summary_info, fout, rep_record)
Three column output: position, aa in representative sequence, ic_vector value

Variable Summary
float Nucleotide4Random = 0.25                                                                  
float Protein20Random = 0.050000000000000003                                                  

Function Details

print_info_content(summary_info, fout=None, rep_record=0)

Three column output: position, aa in representative sequence, ic_vector value

Variable Details

Nucleotide4Random

Type:
float
Value:
0.25                                                                  

Protein20Random

Type:
float
Value:
0.050000000000000003                                                  

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