Package Bio :: Package expressions :: Package blast :: Module wublast
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Module Bio.expressions.blast.wublast

Function Summary
  main(outf)

Variable Summary
Group blastn = <Martel.Expression.Group instance at 0x712d2170...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0x712...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identities = <Martel.Expression.Seq instance at 0...
Seq blastn_score = <Martel.Expression.Seq instance at 0x7122...
Seq blastn_strand = <Martel.Expression.Seq instance at 0x712...
Group blastp = <Martel.Expression.Group instance at 0x712a83a0...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0x712...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_score = <Martel.Expression.Seq instance at 0x7122...
Group blastx = <Martel.Expression.Group instance at 0x712fa710...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0x712...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastx_identities = <Martel.Expression.Seq instance at 0...
Seq blastx_score = <Martel.Expression.Seq instance at 0x7122...
Seq blastx_strand = <Martel.Expression.Seq instance at 0x712...
Seq blastx_table_entry = <Martel.Expression.Seq instance at ...
Seq blastx_to_database = <Martel.Expression.Seq instance at ...
Seq ending = <Martel.Expression.Seq instance at 0x7125cb70>
Seq ending_start = <Martel.Expression.Seq instance at 0x7124...
Group format = <Martel.Expression.Group instance at 0x71283530...
Group header = <Martel.Expression.Group instance at 0x71232cd8...
Seq hit_descr = <Martel.Expression.Seq instance at 0x71172cb...
Seq hit_length = <Martel.Expression.Seq instance at 0x711728...
Seq identities = <Martel.Expression.Seq instance at 0x712366...
MaxRepeat parameters = <Martel.Expression.MaxRepeat instance at 0x...
Seq query_database = <Martel.Expression.Seq instance at 0x71...
Seq spaces_line = <Martel.Expression.Seq instance at 0x711ae...
Seq statistics = <Martel.Expression.Seq instance at 0x7125cb...
Seq table_entry = <Martel.Expression.Seq instance at 0x71221...
Group tblastn = <Martel.Expression.Group instance at 0x7131ddf...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_identities = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0x712...
Seq tblastn_strand = <Martel.Expression.Seq instance at 0x71...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq timestamp = <Martel.Expression.Seq instance at 0x71255a5...
Seq to_table = <Martel.Expression.Seq instance at 0x71221530...
Seq wublast_version = <Martel.Expression.Seq instance at 0x7...

Variable Details

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x712d2170>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7121c918>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7125cbc0>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7123b2b0>                         

blastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7123b260>                         

blastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7122daf8>                         

blastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71236cd8>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x712a83a0>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7121cb20>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7125cb98>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71236418>                         

blastp_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7122daf8>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x712fa710>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7121cd28>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7125cbe8>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71241ad0>                         

blastx_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x712419e0>                         

blastx_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7122daf8>                         

blastx_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71236cd8>                         

blastx_table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7123b828>                         

blastx_to_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7123bda0>                         

ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7125cb70>                         

ending_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7124a990>                         

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71283530>                       

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71232cd8>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71172cb0>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71172850>                         

identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x712366e8>                         

parameters

Type:
MaxRepeat
Value:
<Martel.Expression.MaxRepeat instance at 0x7124aa80>                   

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71221508>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711aeeb8>                         

statistics

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7125cb48>                         

table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71221b48>                         

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x7131ddf0>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7121cf30>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7124a648>                         

tblastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7124a5f8>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7122daf8>                         

tblastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7124a0d0>                         

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71221170>                         

timestamp

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71255a58>                         

to_table

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71221530>                         

wublast_version

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7121c648>                         

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