Method Summary |
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__init__(self)
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end_alignment(self)
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end_database_report(self)
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end_descriptions(self)
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end_header(self)
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end_hsp(self)
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end_parameters(self)
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round(self,
line)
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start_header(self)
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Inherited from AbstractConsumer |
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__getattr__ (self,
attr)
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_unhandled (self,
data)
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_unhandled_section (self)
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Inherited from _HeaderConsumer |
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database_info (self,
line)
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query_info (self,
line)
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reference (self,
line)
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version (self,
line)
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Inherited from _DescriptionConsumer |
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_parse (self,
description_line)
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converged (self,
line)
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description (self,
line)
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description_header (self,
line)
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model_sequences (self,
line)
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no_hits (self,
line)
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nonmodel_sequences (self,
line)
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start_descriptions (self)
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Inherited from _AlignmentConsumer |
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length (self,
line)
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multalign (self,
line)
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start_alignment (self)
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title (self,
line)
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Inherited from _HSPConsumer |
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align (self,
line)
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frame (self,
line)
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identities (self,
line)
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query (self,
line)
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sbjct (self,
line)
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score (self,
line)
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start_hsp (self)
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strand (self,
line)
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Inherited from _DatabaseReportConsumer |
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database (self,
line)
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gapped (self,
line)
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ka_params (self,
line)
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ka_params_gap (self,
line)
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num_letters_in_database (self,
line)
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num_sequences_in_database (self,
line)
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posted_date (self,
line)
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start_database_report (self)
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Inherited from _ParametersConsumer |
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blast_cutoff (self,
line)
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database_length (self,
line)
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dropoff_1st_pass (self,
line)
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effective_database_length (self,
line)
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effective_hsp_length (self,
line)
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effective_query_length (self,
line)
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effective_search_space (self,
line)
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effective_search_space_used (self,
line)
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frameshift (self,
line)
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gap_penalties (self,
line)
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gap_trigger (self,
line)
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gap_x_dropoff (self,
line)
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gap_x_dropoff_final (self,
line)
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hsps_gapped (self,
line)
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hsps_no_gap (self,
line)
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hsps_prelim_gapped (self,
line)
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hsps_prelim_gapped_attempted (self,
line)
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matrix (self,
line)
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num_extends (self,
line)
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num_good_extends (self,
line)
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num_hits (self,
line)
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num_seqs_better_e (self,
line)
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num_sequences (self,
line)
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query_length (self,
line)
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start_parameters (self)
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threshold (self,
line)
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window_size (self,
line)
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