Package Bio :: Package expressions :: Package blast :: Module ncbiblast
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Module Bio.expressions.blast.ncbiblast

Function Summary
  float_param(name)
  float_stat(name)
  int_param(name, signed, comma)
  int_stat(name, signed, comma)
  Number(name, attrs)
  _bit_info(s, name)
  _num_stat(name, signed, comma)
  _nv(s, expr)

Variable Summary
Seq a_info = <Martel.Expression.Seq instance at 0x7119af08>
Group alignment = <Martel.Expression.Group instance at 0x71186...
Alt blast_filter = <Martel.Expression.Alt instance at 0x7116...
Group blastn = <Martel.Expression.Group instance at 0x711c4468...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0x711...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identical = <Martel.Expression.Seq instance at 0x...
Group blastp = <Martel.Expression.Group instance at 0x711d5d28...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0x711...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_identical = <Martel.Expression.Seq instance at 0x...
Group blastx = <Martel.Expression.Group instance at 0x711f9788...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0x711...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq db_stats = <Martel.Expression.Seq instance at 0x711868f0...
Group expect = <Martel.Expression.Group instance at 0x71172d50...
Group format = <Martel.Expression.Group instance at 0x711b4a58...
Seq frame = <Martel.Expression.Seq instance at 0x71183238>
Seq frameshift_info = <Martel.Expression.Seq instance at 0x7...
Seq gap_penalties_stats = <Martel.Expression.Seq instance at...
Seq gapped_lambda_stats = <Martel.Expression.Seq instance at...
Seq generic_info1 = <Martel.Expression.Seq instance at 0x711...
Seq generic_info2 = <Martel.Expression.Seq instance at 0x711...
Group header = <Martel.Expression.Group instance at 0x711726c0...
Group hit = <Martel.Expression.Group instance at 0x711864b8>
Seq hit_descr = <Martel.Expression.Seq instance at 0x71172cb...
Seq hit_length = <Martel.Expression.Seq instance at 0x711728...
Seq homology_line = <Martel.Expression.Seq instance at 0x711...
Group hsp = <Martel.Expression.Group instance at 0x71186468>
Seq hsp_info = <Martel.Expression.Seq instance at 0x7119a4e0...
Group hsp_length = <Martel.Expression.Group instance at 0x7117...
Seq lambda_stats = <Martel.Expression.Seq instance at 0x7118...
Seq matrix_stats = <Martel.Expression.Seq instance at 0x7119...
Group ncbi_version = <Martel.Expression.Group instance at 0x71...
Group num_bits = <Martel.Expression.Group instance at 0x71172d...
Group num_identical = <Martel.Expression.Group instance at 0x7...
Group num_positives = <Martel.Expression.Group instance at 0x7...
Seq query_database = <Martel.Expression.Seq instance at 0x71...
Group query_descr = <Martel.Expression.Group instance at 0x711...
Seq query_letters = <Martel.Expression.Seq instance at 0x711...
Seq query_line = <Martel.Expression.Seq instance at 0x71183c...
Seq s1_info = <Martel.Expression.Seq instance at 0x711acaf8>
Seq s2_info = <Martel.Expression.Seq instance at 0x711b4350>
Seq score = <Martel.Expression.Seq instance at 0x71177ad0>
Seq spaces_line = <Martel.Expression.Seq instance at 0x711ae...
Seq strand = <Martel.Expression.Seq instance at 0x71183878>
Seq subject_line = <Martel.Expression.Seq instance at 0x7118...
Seq t_info = <Martel.Expression.Seq instance at 0x7119a8f0>
Group table = <Martel.Expression.Group instance at 0x7116d760>
Group table_entry = <Martel.Expression.Group instance at 0x711...
Group tblastn = <Martel.Expression.Group instance at 0x7120b1e...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_ending = <Martel.Expression.Seq instance at 0x71...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0x711...
Group tblastx = <Martel.Expression.Group instance at 0x71219c1...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastx_ending = <Martel.Expression.Seq instance at 0x71...
Seq tblastx_frame = <Martel.Expression.Seq instance at 0x711...
Seq tblastx_hsp_header = <Martel.Expression.Seq instance at ...
Group to_table = <Martel.Expression.Group instance at 0x7116d3...
Seq ungapped_lambda_stats = <Martel.Expression.Seq instance ...
Seq x1_info = <Martel.Expression.Seq instance at 0x711a01e8>
Seq x2_info = <Martel.Expression.Seq instance at 0x711a0a80>
Seq x3_info = <Martel.Expression.Seq instance at 0x711ac2d8>
Seq _comma_digits = <Martel.Expression.Seq instance at 0x711...

Variable Details

a_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7119af08>                         

alignment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71186328>                       

blast_filter

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0x71160878>                         

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x711c4468>                       

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711aae18>                         

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711b43c8>                         

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71186260>                         

blastn_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7117e378>                         

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x711d5d28>                       

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711aaf80>                         

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711b4378>                         

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71186288>                         

blastp_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71177c88>                         

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x711f9788>                       

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71169120>                         

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711b43f0>                         

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71186120>                         

db_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711868f0>                         

expect

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71172d50>                       

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x711b4a58>                       

frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71183238>                         

frameshift_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7119a738>                         

gap_penalties_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71195490>                         

gapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7118a800>                         

generic_info1

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711959b8>                         

generic_info2

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7119a0f8>                         

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0x711726c0>                       

hit

Type:
Group
Value:
<Martel.Expression.Group instance at 0x711864b8>                       

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71172cb0>                         

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71172850>                         

homology_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71183df0>                         

hsp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71186468>                       

hsp_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7119a4e0>                         

hsp_length

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71172df0>                       

lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7118aeb8>                         

matrix_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71195210>                         

ncbi_version

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71160c10>                       

num_bits

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71172d00>                       

num_identical

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71172da0>                       

num_positives

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71172f08>                       

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71169fd0>                         

query_descr

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71169788>                       

query_letters

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711695f8>                         

query_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71183cd8>                         

s1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711acaf8>                         

s2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711b4350>                         

score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71177ad0>                         

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711aeeb8>                         

strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71183878>                         

subject_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71186238>                         

t_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7119a8f0>                         

table

Type:
Group
Value:
<Martel.Expression.Group instance at 0x7116d760>                       

table_entry

Type:
Group
Value:
<Martel.Expression.Group instance at 0x7116d6e8>                       

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x7120b1e8>                       

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71169288>                         

tblastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711b43f0>                         

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711862b0>                         

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x7117e8f0>                         

tblastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x71219c10>                       

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711693f0>                         

tblastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711b43a0>                         

tblastx_frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71183418>                         

tblastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71186300>                         

to_table

Type:
Group
Value:
<Martel.Expression.Group instance at 0x7116d350>                       

ungapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71186940>                         

x1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711a01e8>                         

x2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711a0a80>                         

x3_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x711ac2d8>                         

_comma_digits

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x71169da0>                         

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