Package Martel :: Package test :: Package testformats :: Module swissprot38
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Module Martel.test.testformats.swissprot38

Parser for the SWISS-PROT 38 format.

You probably want to use the variables 'record' (for a single record) and 'format' (for a set of records).
Function Summary
  Simple(tag, tag_data)

Variable Summary
Group AC = <Martel.Expression.Group instance at 0x714ea490>
Group AC_block = <Martel.Expression.Group instance at 0x714ea3...
Group bogus_DR_group = <Martel.Expression.Group instance at 0x...
Group CC = <Martel.Expression.Group instance at 0x714dfbe8>
Group CC_begin = <Martel.Expression.Group instance at 0x714df9...
Group CC_copyright = <Martel.Expression.Group instance at 0x71...
Group CC_copyright_begin = <Martel.Expression.Group instance a...
Group CC_copyright_end = <Martel.Expression.Group instance at ...
Group comment = <Martel.Expression.Group instance at 0x714e746...
Group DE = <Martel.Expression.Group instance at 0x714d33f0>
Group DE_block = <Martel.Expression.Group instance at 0x714d3e...
Group DR = <Martel.Expression.Group instance at 0x714e7be8>
Group DR_block = <Martel.Expression.Group instance at 0x714e9b...
Seq DR_embl = <Martel.Expression.Seq instance at 0x714e9af8>
Seq DR_general = <Martel.Expression.Seq instance at 0x714e91...
Seq DR_prosite = <Martel.Expression.Seq instance at 0x714e97...
Group DT_ann_update = <Martel.Expression.Group instance at 0x7...
Group DT_created = <Martel.Expression.Group instance at 0x714e...
Group DT_seq_update = <Martel.Expression.Group instance at 0x7...
Group end = <Martel.Expression.Group instance at 0x714f5800>
Group feature_block = <Martel.Expression.Group instance at 0x7...
ParseRecords format = <Martel.Expression.ParseRecords instance at 0x7...
Group format_expression = <Martel.Expression.Group instance at...
Group FT = <Martel.Expression.Group instance at 0x714eeb70>
Group FT_continuation = <Martel.Expression.Group instance at 0...
Group FT_range = <Martel.Expression.Group instance at 0x714e9d...
Group GN = <Martel.Expression.Group instance at 0x714d3eb8>
Group GN_block = <Martel.Expression.Group instance at 0x714da0...
Group ID = <Martel.Expression.Group instance at 0x714cadf0>
Group KW = <Martel.Expression.Group instance at 0x714e9bc0>
Group KW_block = <Martel.Expression.Group instance at 0x714e9d...
Group OC = <Martel.Expression.Group instance at 0x714da490>
Group OC_block = <Martel.Expression.Group instance at 0x714da5...
Group OG = <Martel.Expression.Group instance at 0x714da2b0>
Group OG_block = <Martel.Expression.Group instance at 0x714da4...
Group OS = <Martel.Expression.Group instance at 0x714da0d0>
Group OS_block = <Martel.Expression.Group instance at 0x714da2...
Group RA = <Martel.Expression.Group instance at 0x714df0f8>
Group RA_block = <Martel.Expression.Group instance at 0x714df1...
Group RC = <Martel.Expression.Group instance at 0x714daad0>
Group RC_block = <Martel.Expression.Group instance at 0x714dac...
Group record = <Martel.Expression.Group instance at 0x714f5a08...
Group reference = <Martel.Expression.Group instance at 0x714df...
Group RL = <Martel.Expression.Group instance at 0x714df440>
Group RL_block = <Martel.Expression.Group instance at 0x714df5...
Group RN = <Martel.Expression.Group instance at 0x714da698>
Group RP = <Martel.Expression.Group instance at 0x714da648>
Group RT = <Martel.Expression.Group instance at 0x714df260>
Group RT_block = <Martel.Expression.Group instance at 0x714df3...
Group RX = <Martel.Expression.Group instance at 0x714dacd8>
Group sequence = <Martel.Expression.Group instance at 0x714f57...
Group single_comment = <Martel.Expression.Group instance at 0x...
Group SQ = <Martel.Expression.Group instance at 0x714eec88>
Group SQ_data = <Martel.Expression.Group instance at 0x714eed2...

Variable Details

AC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714ea490>                       

AC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714ea3f0>                       

bogus_DR_group

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e73f0>                       

CC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714dfbe8>                       

CC_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df940>                       

CC_copyright

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e7198>                       

CC_copyright_begin

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714dfd28>                       

CC_copyright_end

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e7238>                       

comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e7468>                       

DE

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714d33f0>                       

DE_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714d3e40>                       

DR

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e7be8>                       

DR_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e9b48>                       

DR_embl

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x714e9af8>                         

DR_general

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x714e9198>                         

DR_prosite

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x714e9760>                         

DT_ann_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714d09e0>                       

DT_created

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714eaa08>                       

DT_seq_update

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714d0260>                       

end

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714f5800>                       

feature_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714eebe8>                       

format

Type:
ParseRecords
Value:
<Martel.Expression.ParseRecords instance at 0x714f5af8>                

format_expression

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714f5aa8>                       

FT

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714eeb70>                       

FT_continuation

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e9e40>                       

FT_range

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e9dc8>                       

GN

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714d3eb8>                       

GN_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da058>                       

ID

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714cadf0>                       

KW

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e9bc0>                       

KW_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714e9d28>                       

OC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da490>                       

OC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da5f8>                       

OG

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da2b0>                       

OG_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da418>                       

OS

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da0d0>                       

OS_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da238>                       

RA

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df0f8>                       

RA_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df1e8>                       

RC

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714daad0>                       

RC_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714dac38>                       

record

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714f5a08>                       

reference

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df698>                       

RL

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df440>                       

RL_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df5a8>                       

RN

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da698>                       

RP

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714da648>                       

RT

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df260>                       

RT_block

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714df3c8>                       

RX

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714dacd8>                       

sequence

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714f5738>                       

single_comment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714dfc88>                       

SQ

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714eec88>                       

SQ_data

Type:
Group
Value:
<Martel.Expression.Group instance at 0x714eed28>                       

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