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Package Bio :: Package Align :: Module AlignInfo |
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Extract information from alignment objects.
In order to try and avoid huge alignment objects with tons of functions, functions which return summary type information about alignments should be put into classes in this module.
classes: o SummaryInfo o PSSMClasses | |
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PSSM |
Represent a position specific score matrix. |
SummaryInfo |
Calculate summary info about the alignment. |
Function Summary | |
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Three column output: position, aa in representative sequence, ic_vector value |
Variable Summary | |
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float |
Nucleotide4Random = 0.25 |
float |
Protein20Random = 0.050000000000000003 |
Function Details |
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print_info_content(summary_info, fout=None, rep_record=0)Three column output: position, aa in representative sequence, ic_vector value |
Variable Details |
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Nucleotide4Random
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Protein20Random
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