# ChangeLog for sci-biology/samtools # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.26 2015/07/01 18:30:25 zlogene Exp $ 01 Jul 2015; Mikle Kolyada samtools-1.0-r1.ebuild: x86 stable wrt bug #525630 08 Apr 2015; Michał Górny samtools-0.1.19-r2.ebuild: Drop old Python implementations 28 Feb 2015; Justin Lecher files/samtools-1.2-buildsystem.patch, samtools-1.2.ebuild: Fix depend rules in make which break due to unbundling of htslib, #541134; use LD_LIBRARY_PATH druing tests *samtools-1.2 (18 Feb 2015) 18 Feb 2015; Justin Lecher +files/samtools-1.2-buildsystem.patch, +samtools-1.2.ebuild: Version Bump, #540356 *samtools-1.1 (06 Jan 2015) 06 Jan 2015; Justin Lecher +samtools-1.1.ebuild, +files/samtools-1.1-buildsystem.patch: Version Bump *samtools-1.0-r1 (25 Sep 2014) 25 Sep 2014; Justin Lecher +samtools-1.0-r1.ebuild, +files/samtools-1.0-buildsystem.patch: Install bam headers and create libbam.so, #523644 24 Sep 2014; Justin Lecher samtools-1.0.ebuild: Add missing build dep, #523586 *samtools-1.0 (20 Sep 2014) 20 Sep 2014; Justin Lecher -samtools-0.1.18.ebuild, -samtools-0.1.18-r2.ebuild, -samtools-0.1.18-r3.ebuild, samtools-0.1.19-r2.ebuild, +samtools-1.0.ebuild: Version Bump, #523224; drop old *samtools-0.1.19-r2 (23 Mar 2014) 23 Mar 2014; Justin Lecher -samtools-0.1.19-r1.ebuild, +samtools-0.1.19-r2.ebuild: Fix symlink creation, thanks Martin Mokrejs telling me that 11 Feb 2014; Fabian Groffen samtools-0.1.19-r1.ebuild: Reference correct library name on Darwin, thanks Linlin Yan in bug #491812 *samtools-0.1.19-r1 (06 Dec 2013) 06 Dec 2013; Justin Lecher -samtools-0.1.19.ebuild, +samtools-0.1.19-r1.ebuild, files/samtools-0.1.19-buildsystem.patch: Fix underlinking 06 Dec 2013; Justin Lecher samtools-0.1.12.ebuild, samtools-0.1.18.ebuild, samtools-0.1.18-r2.ebuild, samtools-0.1.18-r3.ebuild, samtools-0.1.19.ebuild: Keyword for *-linux, tested by me *samtools-0.1.19 (20 Sep 2013) 20 Sep 2013; Justin Lecher +samtools-0.1.19.ebuild, +files/samtools-0.1.19-buildsystem.patch: Version Bump, #485450 *samtools-0.1.18-r3 (29 Mar 2013) 29 Mar 2013; Justin Lecher +samtools-0.1.18-r3.ebuild: Install bcftools and vcfutils.pl pointed out by mahnmut 11 Mar 2013; Justin Lecher metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly *samtools-0.1.18-r2 (27 Jan 2013) 27 Jan 2013; Justin Lecher -samtools-0.1.18-r1.ebuild, +samtools-0.1.18-r2.ebuild: Add missing deps and correct sed lines, #454134; thanks Torsten Veller *samtools-0.1.18-r1 (23 Jan 2013) 23 Jan 2013; Justin Lecher -samtools-0.1.12a-r1.ebuild, -samtools-0.1.16.ebuild, -samtools-0.1.17.ebuild, +samtools-0.1.18-r1.ebuild, metadata.xml: Drop old; use pkg-config to check for libncurses *samtools-0.1.18 (26 Sep 2011) 26 Sep 2011; Andrey Kislyuk +samtools-0.1.18.ebuild: Version bump *samtools-0.1.17 (18 Jul 2011) 18 Jul 2011; Justin Lecher samtools-0.1.12.ebuild, samtools-0.1.12a-r1.ebuild, samtools-0.1.16.ebuild, +samtools-0.1.17.ebuild: Version Bump, #375519 *samtools-0.1.16 (30 Apr 2011) 30 Apr 2011; Justin Lecher samtools-0.1.12.ebuild, samtools-0.1.12a-r1.ebuild, +samtools-0.1.16.ebuild: Version Bump, #365265 *samtools-0.1.12a-r1 (14 Mar 2011) 14 Mar 2011; Kacper Kowalik -samtools-0.1.12a.ebuild, +samtools-0.1.12a-r1.ebuild: Drop empty RDEP/DEP, respect CC,LDFLAGS wrt 358563. Thanks to Diego for the report. *samtools-0.1.12a (18 Feb 2011) 18 Feb 2011; Andrey Kislyuk +samtools-0.1.12a.ebuild: Address bug 354941, build library, correct versioning 17 Feb 2011; Thomas Kahle samtools-0.1.12.ebuild: x86 stable per bug 353566 11 Feb 2011; Markos Chandras samtools-0.1.12.ebuild: Stable on amd64 wrt bug #353566 *samtools-0.1.12 (21 Dec 2010) 21 Dec 2010; Andrey Kislyuk +samtools-0.1.12.ebuild, +metadata.xml: Version bump, import from Science overlay 22 Jan 2010; root Version bump 26 Feb 2009; Andrey Kislyuk ChangeLog: New package, ebuild written by me